Stack

I build maintainable Python and R software and reproducible research artifacts, from tested packages and CI workflows to published documentation. My goal is to build FAIR (findable, accessible, interoperable, reusable) software which can be reused by the community. See Software for more information about my work on open-source software and Home for getting some impression of my background.

Languages & environments

Programming Languages

Python R Stan

Package & Environment Management

Python R

uv pip poetry pixi renv

Examples: elicito GHG-forcing

Build & quality

Version Control

Git GitHub GitLab

Profiles: github.com/florence-bockting gitlab.com/florence-bockting

Testing, Linting & Formatting

Python R

pytest black mypy ruff testthat lintr

Examples: elicito tests GHG-forcing tests

Continuous Integration

Python R

GitHub Actions

Examples: elicito workflows

Release & open science

Publishing

Python R

PyPI conda-forge CRAN

Examples: elicito (PyPI) gradient-aware-harmonisation elicito (conda-forge)

Documentation

Python R

Sphinx Read the Docs roxygen2

Examples: elicito docs elicito tutorials

Data Management

Zenodo OSF

Examples: OSF profile Zenodo record

Communicate & scale

Writing & Reporting

Python R

Jupyter Quarto Rmd JupyText Overleaf

Examples: LOO tutorial (Rmd) elicito tutorials CMIP7 manuscripts

Apps

R

Shiny

Examples: mixed-effects models app

Workflow Orchestration

Python

Prefect

Examples: GHG-forcing pipeline

High Performance Computing

LIDO3 (TU Dortmund) NERSC

Examples: climate data pipelines